Package: csalert 2024.6.24

Richard Aubrey White

csalert: Alerts from Public Health Surveillance Data

Helps create alerts and determine trends by using various methods to analyze public health surveillance data. The primary analysis method is based upon a published analytics strategy by Benedetti (2019) <doi:10.5588/pha.19.0002>.

Authors:Beatriz Valcarcel Salamanca [aut], Chi Zhang [aut], Richard Aubrey White [aut, cre], CSIDS [cph]

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csalert.pdf |csalert.html✨
csalert/json (API)
NEWS

# Install 'csalert' in R:

install.packages('csalert', repos = c('https://csids.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/csids/csalert/issues

On CRAN:

csverse

4.48 score 1 stars 668 downloads 7 exports 51 dependencies

Last updated 5 months agofrom:e39cd72002. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 05 2024
R-4.5-win	OK	Nov 05 2024
R-4.5-linux	OK	Nov 05 2024
R-4.4-win	OK	Nov 05 2024
R-4.4-mac	OK	Nov 05 2024
R-4.3-win	OK	Nov 05 2024
R-4.3-mac	OK	Nov 05 2024

Exports:add_holiday_effect short_term_trend short_term_trend_sts_v1 signal_detection_hlm simulate_baseline_data simulate_seasonal_outbreak_data simulate_spike_outbreak_data

Dependencies:cli colorspace cpp11 crayon csdata cstidy cstime data.table deldir digest fansi farver generics ggplot2 glm2 glue gtable isoband labeling lattice lifecycle lubridate magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig polyclip polyCub R6 RColorBrewer rlang scales sp spatstat.data spatstat.geom spatstat.univar spatstat.utils stringi stringr surveillance tibble timechange utf8 vctrs viridisLite withr xtable

Short term trend

Richard Aubrey White, Chi Zhang

Rendered fromshort_term_trend.Rmdusingknitr::rmarkdownon Nov 05 2024.

Last update: 2024-06-24
Started: 2022-04-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Holiday effect --	add_holiday_effect
Prediction thresholds	prediction_interval
Prediction thresholds	prediction_interval.glm
Determine the short term trend of a timeseries	short_term_trend short_term_trend.csfmt_rts_data_v1
Determine the short term trend of a timeseries	short_term_trend_sts_v1
Determine the short term trend of a timeseries	signal_detection_hlm signal_detection_hlm.csfmt_rts_data_v1
Simulate baseline data -- Simulation of baseline data.	simulate_baseline_data
Simulate seasonal outbreaks --	simulate_seasonal_outbreak_data
Simulate spiked outbreaks --	simulate_spike_outbreak_data