Package: cstidy 2023.5.24
Richard Aubrey White
cstidy: Helpful Functions for Cleaning Surveillance Data
Helpful functions for the cleaning and manipulation of surveillance data, especially with regards to the creation and validation of panel data from individual level surveillance data.
Authors:
cstidy_2023.5.24.tar.gz
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cstidy_2023.5.24.tar.gz(r-4.5-noble)cstidy_2023.5.24.tar.gz(r-4.4-noble)
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cstidy.pdf |cstidy.html✨
cstidy/json (API)
NEWS
| # Install 'cstidy' in R: |
| install.packages('cstidy', repos = c('https://csids.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/csids/cstidy/issues
Pkgdown site:https://www.csids.no
- nor_covid19_cases_by_time_location_csfmt_rts_v1 - Covid-19 data for PCR-confirmed cases in Norway
- nor_covid19_icu_and_hospitalization_csfmt_rts_v1 - Norwegian Covid-19 data for ICU and hospitalization
Last updated 10 months agofrom:642d49b2f8. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 11 2025 |
| R-4.5-win | OK | Mar 11 2025 |
| R-4.5-mac | OK | Mar 11 2025 |
| R-4.5-linux | OK | Mar 11 2025 |
| R-4.4-win | OK | Mar 11 2025 |
| R-4.4-mac | OK | Mar 11 2025 |
| R-4.4-linux | OK | Mar 11 2025 |
| R-4.3-win | OK | Mar 11 2025 |
| R-4.3-mac | OK | Mar 11 2025 |
Exports:%>%csfmt_rts_data_v1csfmt_rts_data_v2expand_time_togenerate_test_dataheal_time_csfmt_rts_data_v1heal_time_csfmt_rts_data_v2identify_data_structureremove_class_csfmt_rts_dataset_csfmt_rts_data_v1set_csfmt_rts_data_v2unique_time_series
Dependencies:clicolorspacecrayoncsdatacstimedata.tabledigestfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalesstringistringrtibbleutf8vctrsviridisLitewithr
Benchmarks
Rendered frombenchmarks.Rmdusingknitr::rmarkdownon Mar 11 2025.Last update: 2023-04-26
Started: 2023-04-25
Data format (csfmt_rts_data_v2)
Rendered fromcsfmt_rts_data_v2.Rmdusingknitr::rmarkdownon Mar 11 2025.Last update: 2023-12-28
Started: 2023-12-28
Introduction
Rendered fromcstidy.Rmdusingknitr::rmarkdownon Mar 11 2025.Last update: 2023-12-28
Started: 2023-01-16
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Expand time to | expand_time_to |
| Generate test data | generate_test_data |
| Provides corresponding healed times (deprecated) | heal_time_csfmt_rts_data_v1 |
| Provides corresponding healed times | heal_time_csfmt_rts_data_v2 |
| Hash the data structure of a dataset for a given column | identify_data_structure identify_data_structure.csfmt_rts_data_v2 identify_data_structure.tbl_Microsoft SQL Server |
| Covid-19 data for PCR-confirmed cases in Norway (nation and county) | nor_covid19_cases_by_time_location_csfmt_rts_v1 |
| Norwegian Covid-19 data for ICU and hospitalization | nor_covid19_icu_and_hospitalization_csfmt_rts_v1 |
| Remove class csfmt_rts_data_* | remove_class_csfmt_rts_data |
| Convert data.table to csfmt_rts_data_v1 (deprecated) | csfmt_rts_data_v1 set_csfmt_rts_data_v1 |
| Convert data.table to csfmt_rts_data_v2 | csfmt_rts_data_v2 set_csfmt_rts_data_v2 |
| Unique time series | unique_time_series |
